PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_8F684013D.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 139aa    MW: 15352.3 Da    PI: 9.0046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_8F684013D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-3176135159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ k++++pr+Y+rC++a gCpvkkkv+rsaed+++++ tYegeHnh+
  Traes_6DS_8F684013D.2  76 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApGCPVKKKVQRSAEDKTILVATYEGEHNHS 135
                            58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.0671137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.3E-3174137IPR003657WRKY domain
SuperFamilySSF1182904.58E-2775137IPR003657WRKY domain
SMARTSM007747.0E-3676136IPR003657WRKY domain
PfamPF031063.9E-2677134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
EGGSVSPSRK RKSEESLGTP PPSHQQHYAA GLAYAAAPDQ AECTSGEPCK RIREECKPVV  60
SKRYVHADPA DLSLVVKDGY QWRKYGQKVT KDNPCPRAYF RCSFAPGCPV KKKVQRSAED  120
KTILVATYEG EHNHSQPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-24721381075WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5366670.0AJ536667.1 Hordeum vulgare mRNA for putative WRKY1 protein.
GenBankAK3602690.0AK360269.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1114C23.
GenBankAY5415860.0AY541586.1 Hordeum vulgare WRKY transcription factor (wrky38) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951681.12e-73PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH71e-40WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLW5H3P93e-99W5H3P9_WHEAT; Uncharacterized protein
STRINGMLOC_60890.14e-92(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.28e-40WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]